{"99351":{"#nid":"99351","#data":{"type":"news","title":"How to do heavy computational lifting in genomes and transciptomes","body":[{"value":"\u003Cp\u003E\u003Cem\u003E\u003Cstrong\u003EThe Scientist , Jun 8\u003C\/strong\u003E\u003C\/em\u003E - You\u0027ve unpacked your next-generation sequencing system and popped in some DNA or RNA. Five days later, you\u0027ve sequenced 50 million tiny strings of nucleotides. Then what? Tolerating Mismatches USER: Nicholas Bergman, assistant professor of biology, Georgia Institute of Technology, Project: Mapping the transcriptome of anthrax-causing bacteria (Bacillus anthracis) and measuring gene expression levels Bergman\u0027s group uses Applied Biosystems\u0027 SOLiD gene sequencer, because it produces more data than do other new platforms... \u0022It would take [an inaccuracy] and say this read is unmappable,\u0022 Bergman says. The group needed a new algorithm that would tolerate these errors and move through vast amounts of data. (\u003Ca href=\u0022http:\/\/www.the-scientist.com\/article\/display\/55716\/\u0022\u003EFull Story\u003C\/a\u003E)\u003C\/p\u003E","summary":null,"format":"limited_html"}],"field_subtitle":"","field_summary":[{"value":"\u003Cem\u003E\u003Cstrong\u003EThe Scientist , Jun 8\u003C\/strong\u003E\u003C\/em\u003E - You\u0027ve unpacked your next-generation sequencing system and popped in some DNA or RNA. Five days later, you\u0027ve sequenced 50 million tiny strings of nucleotides. Then what? Tolerating Mismatches USER: Nicholas Bergman, assistant professor of biology, Georgia Institute of Technology, Project: Mapping the transcriptome of anthrax-causing bacteria (Bacillus anthracis) and measuring gene expression levels Bergman\u0027s group uses Applied Biosystems\u0027 SOLiD gene sequencer, because it produces more data than do other new platforms... \u0022It would take [an inaccuracy] and say this read is unmappable,\u0022 Bergman says. The group needed a new algorithm that would tolerate these errors and move through vast amounts of data.","format":"limited_html"}],"field_summary_sentence":[{"value":"You\u0027ve sequenced 50 million tiny strings of nucleotides. Then w"}],"uid":"27245","created_gmt":"2009-07-02 00:00:00","changed_gmt":"2022-05-26 17:09:36","author":"Troy Hilley","boilerplate_text":"","field_publication":"","field_article_url":"","dateline":{"date":"2009-07-02T00:00:00-04:00","iso_date":"2009-07-02T00:00:00-04:00","tz":"America\/New_York"},"extras":[],"hg_media":{"99361":{"id":"99361","type":"image","title":"Nicholas Bergman","body":null,"created":"1449178150","gmt_created":"2015-12-03 21:29:10","changed":"1475894715","gmt_changed":"2016-10-08 02:45:15"}},"media_ids":["99361"],"related_links":[{"url":"http:\/\/www.the-scientist.com\/article\/display\/55716\/","title":"The Scientist.com"},{"url":"http:\/\/www.biology.gatech.edu\/faculty\/nicholas-bergman\/","title":"Nicholas Bergman"},{"url":"http:\/\/www.biology.gatech.edu\/","title":"School of Biology"}],"groups":[{"id":"1275","name":"School of Biological Sciences"}],"categories":[],"keywords":[],"core_research_areas":[],"news_room_topics":[],"event_categories":[],"invited_audience":[],"affiliations":[],"classification":[],"areas_of_expertise":[],"news_and_recent_appearances":[],"phone":[],"contact":[{"value":"\u003Cp\u003ESchool of Biology - Biology\u003C\/p\u003E","format":"limited_html"}],"email":["admin@biology.gatech.edu"],"slides":[],"orientation":[],"userdata":""}}}