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  <title><![CDATA[BioE MS Thesis Presentation - Andre Berry]]></title>
  <body><![CDATA[<ul><li><strong>Dr. Corey Wilson</strong>&nbsp;- Love Family Professor and Associate Chair for Faculty Development – Georgia Institute of Technology, School of Chemical and Biomolecular Engineering</li><li><strong>Dr. Raquel Lieberman</strong>&nbsp;- Professor, Sepcic-Pfeil Chair in Chemistry - Georgia Institute of Technology, School of Chemistry &amp; Biochemistry</li><li><strong>Dr. Matthew Realff</strong>&nbsp;- Professor and David I.J. Wang Faculty Fellow - Georgia Institute of Technology, School of Chemical and Biomolecular Engineering</li></ul><p>This work aims to advance the synthetic design of allosterically regulated systems by extracting sequence-function correlations from engineered LacI-based anti-repressors. Through deep mutational scanning, we have generated comprehensive datasets correlating single-mutant genotypes with functional phenotypes. Building upon the experimental dataset and alongside model development efforts that utilize it, I introduce a novel approach to complement these analyses. By projecting deep mutational scanning data onto a representative protein structure model, I enable visual inspection and procedural analysis of position-based relationships. This projection, combined with quantitative data analysis across multiple datasets, generates a comprehensive, site-specific value list that can be algorithmically manipulated. This integrated approach, blending structural visualization with quantitative analysis, provides a deeper understanding towards position linked factors integral in LacI allostery. Ultimately, this research seeks to establish a foundation for improved engineering strategies for synthetic transcription factors and to enhance the development of features relevant for phenotype prediction efforts by further elucidating the mechanistic underpinnings of anti-repressor function and contributing to the broader understanding of protein allostery.</p>]]></body>
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