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  <title><![CDATA[MS Proposal by Avik Banerjee]]></title>
  <body><![CDATA[<p>Avik Banerjee<br>[Advisor: Prof. Christopher Carr] will propose a master’s thesis entitled,<br>Software Architecture Development of Single Molecule Detection<br>Instrumentation for Astrobiology Exploration<br>On<br>Friday, November 1st at 9:00 a.m.<br>Engineering Science &amp; Mechanics Building 108<br>Abstract</p><p>A primary goal of planetary exploration is the search for life beyond Earth, particularly by&nbsp;<br>detecting biomolecular signatures on celestial bodies like Europa and Enceladus, which may have the&nbsp;<br>conditions to support life. The Electronic Life-detection Instrument for Europa/Enceladus (ELIE) is&nbsp;<br>designed to detect amino acids, RNA, DNA, and other charged polymers indicative of life. Based on&nbsp;<br>the benchtop nanogap detection technology developed by Osaka University, the original ELIE&nbsp;<br>prototype successfully demonstrated the detection of single molecules in a zero-g flight. However,&nbsp;<br>this system was relatively large and required manual operations such as chip loading and cleaning.&nbsp;<br>Designed to address these limitations, the ELIE 2.0 prototype marked a significant improvement by&nbsp;<br>reducing the system’s mass and volume and demonstrating the novel ability to monitor gap size&nbsp;<br>during nanogap formation. ELIE 2.0 also laid the foundation for automated sample delivery and&nbsp;<br>electrophoresis. Despite these advancements, ELIE 2.0 had critical issues relating to noise,&nbsp;<br>leading to the development of ELIE 3.0. ELIE 3.0 aims to address these challenges and increase the&nbsp;<br>instrument’s TRL. This work focuses on developing software architecture to integrate new hardware,&nbsp;<br>including a new amplifier to enable multi-channel detection and control across the nanogap chip;&nbsp;<br>and a smaller vacuum-compatible piezoelectric actuator, requiring software modifications to&nbsp;<br>optimize its performance. To improve precision detection, calibration scripts will be developed to&nbsp;<br>fine-tune voltages across the E4 channels, ensuring minimal noise and maximum signal clarity.&nbsp;<br>Additionally, a centralized dispatch loop will automate key ELIE functions, accounting for each of&nbsp;<br>their dependencies, and streamlining 30 μl sample delivery, gap formation and control, and sample&nbsp;<br>measurement. All this functionality will be packaged into GUI software that provides user- friendly&nbsp;<br>testing and system operation. The ELIE 3.0 prototype will enable experiments that advance the&nbsp;<br>instrument hardware/software from TRL 2 to TRL 4.<br>Committee<br>• &nbsp;Prof. Christopher Carr – School of Aerospace Engineering (advisor)<br>• &nbsp;Prof. Masatoshi (Toshi) Hirabayashi – School of Aerospace Engineering<br>• &nbsp;Prof. Brian Gunter – School of Aerospace Engineering<br>&nbsp;</p>]]></body>
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      <value2><![CDATA[2024-11-01T11:00:00-04:00]]></value2>
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        <value><![CDATA[MS Proposal]]></value>
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